8FKM | pdb_00008fkm

Human Atg3 with deletions of residues 1 to 25 and 90 to 190

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
2	2D 1H-13C HSQC	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
3	3D HNCO	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
4	3D HNCA	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
5	3D HN(CA)CO	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
9	3D HNCACB	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
8	3D HN(COCA)CB	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
7	3D 1H-13C NOESY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	100% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE III 850
6	3D 1H-15N NOESY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE III 850
10	3D HCCH-TOCSY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	100% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
11	2D ARTSY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	92% H2O/8% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
15	2D ARTSY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3, 6.5 mg/mL Pf1 phage	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
14	2D ARTSY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3, 7 % positive gel	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
13	2D ARTSY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3, 5 % negative gel	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
12	2D ARTSY	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3, 5 % neutral gel	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
16	HBHA(CO)NH	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	96% H2O/4% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
17	2D Hb(CbCgCd)Hd	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	100% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
18	2D Hb(CbCgCdCe)He	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	100% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
19	3D 1H-13C NOESY aromatic	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	100% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600
20	2D 1H-13C HSQC aromatic	150 mM NaCl, 50 mM HEPES, 2 mM TCEP, 0.5 mM [U-13C; U-15N] human Atg3	100% D2O	NaCl 150 mM	6.5	1 Pa	298	Bruker AVANCE II 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE II	600
2	Bruker	AVANCE III	850

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	10
Representative Model	1 (medoid)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	CYANA		Guntert, Mumenthaler and Wuthrich
2	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
3	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	peak picking	NMRView		Johnson, One Moon Scientific