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Structure of Bispecific CAP256V2LS-J3 Fab in complex with BG505 DS-SOSIP.664
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6NNF
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.442 f_angle_d 0.548 f_chiral_restr 0.045 f_plane_restr 0.004 f_bond_d 0.003
Sample CAP256V2LS-J3-3 Fab in complex with BG505 DS-SOSIP.664
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 118472 Reported Resolution (Å) 3.18 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6NNF) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 51.19
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION Leginon CTF CORRECTION cryoSPARC 3 MODEL REFINEMENT PHENIX CLASSIFICATION cryoSPARC 3 RECONSTRUCTION cryoSPARC 3
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION