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Crystal Structure Of Aldose Reductase (AKR1B1) Complexed With NADP+ And AT-003
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 25%PEG 3,350, 100 mM Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.21 44.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.186 α = 75.771 b = 46.957 β = 67.466 c = 47.379 γ = 76.871
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 36.733 81.7 0.058 0.082 0.058 0.999 11.3 2 44438
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.47 0.418 0.591 0.418 0.687 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.45 36.733 44436 2219 81.691 0.146 0.1451 0.1439 0.1689 0.1648 0.05 16.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.106 0.099 0.53 -0.158 -0.313 0.481
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.808 r_dihedral_angle_3_deg 13.662 r_dihedral_angle_2_deg 7.367 r_lrange_it 5.905 r_lrange_other 5.88 r_dihedral_angle_1_deg 5.843 r_scangle_it 5.029 r_scangle_other 5.028 r_scbond_it 3.27 r_scbond_other 3.269
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.808 r_dihedral_angle_3_deg 13.662 r_dihedral_angle_2_deg 7.367 r_lrange_it 5.905 r_lrange_other 5.88 r_dihedral_angle_1_deg 5.843 r_scangle_it 5.029 r_scangle_other 5.028 r_scbond_it 3.27 r_scbond_other 3.269 r_mcangle_it 2.651 r_mcangle_other 2.65 r_angle_refined_deg 1.845 r_mcbond_it 1.771 r_mcbond_other 1.771 r_dihedral_angle_other_2_deg 1.033 r_angle_other_deg 0.584 r_symmetry_nbd_refined 0.295 r_nbd_refined 0.22 r_symmetry_xyhbond_nbd_refined 0.194 r_nbtor_refined 0.188 r_nbd_other 0.188 r_symmetry_nbd_other 0.185 r_xyhbond_nbd_refined 0.111 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.082 r_gen_planes_refined 0.012 r_bond_refined_d 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2518 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing