8FCS | pdb_00008fcs

Structure of pre-miR-31 reveals an active role in Dicer processing


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.5 mM RNA (71-MER), 50 mM KPhosphate buffer, 1 mM non MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
22D 1H-1H NOESY0.45 mM A2rGr-labeled RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 600
32D 1H-1H NOESY0.45 mM A2rGrUr-labeled RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 600
42D 1H-1H NOESY0.45 mM AHCH-labeled RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 600
52D 1H-1H NOESY0.45 mM GHU6r-labeled RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 600
122D 1H-1H TOCSY0.5 mM RNA (71-MER), 50 mM KPhosphate buffer, 1 mM non MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
112D 1H-13C HSQC0.48 mM 15N/13C AG-labeled RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
102D 1H-15N HSQC0.56 mM 15N AU-labeled RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl290% H2O/10% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
92D 1H-15N BESTsellr HNN COSY0.48 mM 15N/13C AG-labeled RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
82D 1H-13C IPAP-HSQC0.40 mM 15N/13C AG-labeled_3 RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl290% H2O/10% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
132D 1H-13C IPAP-HSQC0.60 mM 15N/13C AG-labeled_4 RNA (71-MER), 50 mM KPhosphate buffer, 1 mM non MgCl2, 10 mg/mL non Pf1 phage90% H2O/10% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
142D 1H-13C HSQC0.48 mM 15N/13C AG-labeled_2 RNA (71-MER), 50 mM KPhosphate buffer, 1 mM MgCl2100% D2O0.0025 M7.51 atm310Bruker AVANCE NEO 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
2BrukerAVANCE NEO800
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number640
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingNMRFxJohnson
3chemical shift assignmentNMRViewJ9.2.0-b24Johnson
4data analysisNMRViewJJohnson
7structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5structure calculationAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman
6refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman