8F36

Ubx Homeodomain NMR solution structure


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
22D 1H-13C HSQC aliphatic0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
32D 1H-13C HSQC aromatic0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
43D HNCA0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
53D HNCO0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
63D HN(CO)CA0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
73D HCCH-TOCSY aromatic0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
83D HCCH-TOCSY aliphatic0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
93D HN(CA)CO0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
103D C(CO)NH0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
113D CBCA(CO)NH0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
123D HNCACB0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
133D 1H-15N NOESY0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
143D 1H-13C NOESY aromatic0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
153D 1H-13C NOESY aliphatic0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
163D H(CCO)NH0.76 mM [U-100% 13C; U-100% 15N] UbxHD, 20 mM MES, 100 mM NaCl, 2 mM TCEP, 5 mM MgCl290% H2O/10% D2O128 mM6.01 atm298Varian INOVA AVANCE 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA AVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
2refinementCYANAGuntert
3chemical shift assignmentNMRViewJ9.1.0-b63One Moon Scientific
4peak pickingNMRViewJ9.1.0-b63One Moon Scientific
5processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6structure calculationCYANAGuntert