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Lysozyme Anomalous Dataset at 273 K and 7.1 keV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 5 uL of 0.6 M Sodium Chloride in 100 mM Sodium Acetate buffer pH 4.5 and 25% ethylene glycol were mixed with 5 uL 100 mg/mL lysozyme in 100 mM Sodium Acetate.
Crystal Properties Matthews coefficient Solvent content 1.93 36.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.322 α = 90 b = 77.322 β = 90 c = 37.082 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 PIXEL DECTRIS EIGER X 16M 2020-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.7462 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 38.663 99.5 0.028 0.999 29.7 5.3 9255 26.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 97.3 0.104 0.082 0.988 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.901 38.663 9230 478 99.258 0.135 0.1334 0.1476 0.1705 0.1795 22.132
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.388 -0.388 0.775
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.969 r_dihedral_angle_3_deg 13.823 r_dihedral_angle_2_deg 9.966 r_lrange_it 7.465 r_lrange_other 7.417 r_dihedral_angle_1_deg 6.757 r_scangle_it 6.404 r_scangle_other 6.4 r_scbond_it 4.455 r_scbond_other 4.452
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.969 r_dihedral_angle_3_deg 13.823 r_dihedral_angle_2_deg 9.966 r_lrange_it 7.465 r_lrange_other 7.417 r_dihedral_angle_1_deg 6.757 r_scangle_it 6.404 r_scangle_other 6.4 r_scbond_it 4.455 r_scbond_other 4.452 r_mcangle_other 2.897 r_mcangle_it 2.89 r_mcbond_other 2.315 r_mcbond_it 2.314 r_angle_refined_deg 1.582 r_angle_other_deg 0.552 r_xyhbond_nbd_refined 0.375 r_nbd_refined 0.239 r_symmetry_nbd_refined 0.205 r_symmetry_nbd_other 0.203 r_metal_ion_refined 0.192 r_nbd_other 0.186 r_nbtor_refined 0.179 r_symmetry_xyhbond_nbd_refined 0.15 r_chiral_restr 0.081 r_symmetry_nbtor_other 0.077 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing