☰ Navigation Tabs
CTX-M-14 beta-lactamase mutant- N132A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YLT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 296 0.1 M Tris-HCl, PEG 10,000 (20% w/v)
Crystal Properties Matthews coefficient Solvent content 2.11 41.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.23 α = 90 b = 60.41 β = 90 c = 264.1 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2019-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.00001 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 42.29 95.3 0.183 0.084 0.975 6 5.9 69726 10.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.52 95.3 0.118 0.132 0.058 0.975 7.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1YLT 1.5 42.29 65806 3450 90.71 0.19101 0.1894 0.1895 0.22212 0.2219 RANDOM 13.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 -0.06 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.995 r_dihedral_angle_3_deg 12.637 r_dihedral_angle_4_deg 10.305 r_dihedral_angle_1_deg 6.527 r_long_range_B_refined 5.558 r_angle_refined_deg 2.122 r_scbond_it 2.078 r_mcangle_it 1.544 r_mcbond_it 1.064 r_chiral_restr 0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.995 r_dihedral_angle_3_deg 12.637 r_dihedral_angle_4_deg 10.305 r_dihedral_angle_1_deg 6.527 r_long_range_B_refined 5.558 r_angle_refined_deg 2.122 r_scbond_it 2.078 r_mcangle_it 1.544 r_mcbond_it 1.064 r_chiral_restr 0.123 r_bond_refined_d 0.035 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3897 Nucleic Acid Atoms Solvent Atoms 551 Heterogen Atoms 28
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction PHASER phasing