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CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AAR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295.15 25% w/v PEG 3350, 0.2M ammonium sulfate, 0.1M Bis-Tris pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.839 α = 90 b = 77.164 β = 90 c = 135.823 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97918 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 67.911 99.3 1 1.27 7.8 34404
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 96.8 0.355 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1AAR 1.7 67.911 34167 1742 99.265 0.16 0.1567 0.2206 0.2217 50.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.338 0.272
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.038 r_scangle_it 15.869 r_scbond_it 15.47 r_dihedral_angle_3_deg 15.336 r_lrange_it 14.088 r_dihedral_angle_1_deg 8.284 r_mcangle_it 8.025 r_rigid_bond_restr 7.753 r_mcbond_it 7.721 r_dihedral_angle_2_deg 7.656
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.038 r_scangle_it 15.869 r_scbond_it 15.47 r_dihedral_angle_3_deg 15.336 r_lrange_it 14.088 r_dihedral_angle_1_deg 8.284 r_mcangle_it 8.025 r_rigid_bond_restr 7.753 r_mcbond_it 7.721 r_dihedral_angle_2_deg 7.656 r_angle_refined_deg 2.19 r_nbtor_refined 0.253 r_symmetry_xyhbond_nbd_refined 0.224 r_symmetry_nbd_refined 0.16 r_chiral_restr 0.153 r_nbd_refined 0.148 r_ncsr_local_group_1 0.145 r_ncsr_local_group_5 0.143 r_xyhbond_nbd_refined 0.137 r_ncsr_local_group_4 0.135 r_ncsr_local_group_6 0.129 r_ncsr_local_group_3 0.128 r_ncsr_local_group_2 0.104 r_bond_refined_d 0.011 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2406 Nucleic Acid Atoms Solvent Atoms 160 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling CRANK2 phasing