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Crystal structure of the autotransporter Ssp from Serratia marcescens.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.15 0.2 M potassium iodide, 20% (w/v) PEG 3350, 0.1 M HEPES
Crystal Properties Matthews coefficient Solvent content 2.41 48.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.482 α = 91.52 b = 55.356 β = 93.04 c = 61.883 γ = 102.76
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537, 0.9642 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 46.2 97.1 0.078 0.093 0.05 0.997 8.3 3.3 39914
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 93.3 0.597 0.724 0.405 0.774 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2 39.89 37873 2033 97.04 0.1653 0.1633 0.1768 0.2015 0.2132 RANDOM 39.742
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.99 2.09 -1.99 -1.96 0.1 -3.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.924 r_dihedral_angle_4_deg 18.811 r_dihedral_angle_3_deg 13.996 r_dihedral_angle_1_deg 7.099 r_angle_refined_deg 1.46 r_angle_other_deg 1.333 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.924 r_dihedral_angle_4_deg 18.811 r_dihedral_angle_3_deg 13.996 r_dihedral_angle_1_deg 7.099 r_angle_refined_deg 1.46 r_angle_other_deg 1.333 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4604 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Coot model building XDS data scaling Auto-Rickshaw phasing BUCCANEER phasing SHELXCD phasing