8DSX | pdb_00008dsx

NMR STRUCTURE OF THE BACTERIOPHAGE LAMBDA EA22 C-TERMINAL DOMAIN


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
22D 1H-15N HSQC5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
32D 1H-13C HSQC aliphatic5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
43D 1H-15N NOESY5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
53D 1H-13C NOESY5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
123D C(CO)NH5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
113D CBCA(CO)NH5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
103D HNCACB5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
93D HNCA5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
83D HN(CO)CA5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
73D HNCO5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
63D HN(CA)CO5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
163D HCCH-TOCSY5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
153D CCH-TOCSY5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.6 mM [U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Bruker AVANCE III 700
143D 12C-filtered 13C-edited5 mM TRIS, 50 mM sodium chloride, 0.05 % w/v sodium azide, 5 mM DTT, 0.4 mM 1:1 12C/[U-98% 13C; U-98% 15N] LAMBDA EA2290% H2O/10% D2O50 mM7.71 atm308Varian INOVA 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III700
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealingbest 100 of 5000 structures that satisfied restraintsCYANA
simulated annealingbest 20 of 100 structures with lowest energyRosetta
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number1000
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2021.051.13.12Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2refinementCYANA3Guntert, Mumenthaler and Wuthrich
3data analysisCcpNmr Analysis2.5.2CCPN
4refinementRosetta2021.16.61629Baker
5structure calculationCYANA3Guntert, Mumenthaler and Wuthrich