☰ Navigation Tabs
Crystal structure of human CELSR1 EC1-4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5V5X 5v5x, 5w4t, 3q2v, 3q2w experimental model PDB 5W4T 5v5x, 5w4t, 3q2v, 3q2w experimental model PDB 3Q2V 5v5x, 5w4t, 3q2v, 3q2w experimental model PDB 3Q2W 5v5x, 5w4t, 3q2v, 3q2w
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 3 M Sodium Chloride, 0.1 M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 6.46 80.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 305.653 α = 90 b = 90.356 β = 96.166 c = 94.949 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9798 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.55 47.244 98.7 0.993 10.094 5.7 31176
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.55 3.61 98.2 0.768 2.5 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5v5x, 5w4t, 3q2v, 3q2w 3.554 47.244 30766 1483 98.209 0.217 0.2157 0.2175 0.2523 0.2529 123.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.574 -7.28 14.088 2.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.694 r_dihedral_angle_3_deg 18.291 r_dihedral_angle_4_deg 17.05 r_lrange_it 15.352 r_lrange_other 15.351 r_dihedral_angle_1_deg 9.505 r_scangle_it 9.218 r_scangle_other 9.217 r_mcangle_other 8.273 r_mcangle_it 8.271
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.694 r_dihedral_angle_3_deg 18.291 r_dihedral_angle_4_deg 17.05 r_lrange_it 15.352 r_lrange_other 15.351 r_dihedral_angle_1_deg 9.505 r_scangle_it 9.218 r_scangle_other 9.217 r_mcangle_other 8.273 r_mcangle_it 8.271 r_scbond_it 5.777 r_scbond_other 5.777 r_mcbond_it 5.326 r_mcbond_other 5.317 r_angle_refined_deg 1.932 r_angle_other_deg 1.299 r_metal_ion_refined 0.327 r_nbd_other 0.289 r_nbd_refined 0.272 r_symmetry_nbd_refined 0.22 r_symmetry_nbd_other 0.211 r_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.178 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.072 r_symmetry_xyhbond_nbd_refined 0.047 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6647 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing