☰ Navigation Tabs
Streptavidin WT Co-TAML artificial metalloenzyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PK2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 2 M ammonium sulfate,
0.1 M sodium acetate pH 4.0
for soaking pH adjustment to pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 192.499 α = 90 b = 57.701 β = 107.442 c = 57.701 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99988 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 45.954 98.2 0.097 0.115 0.06 0.998 10.3 6.9 40202
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 1.377 1.624 0.852 0.577 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 45.954 40182 1957 97.835 0.202 0.2018 0.214 0.2184 40.897
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 0.445 -0.756 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.227 r_dihedral_angle_3_deg 12.949 r_lrange_it 10.144 r_lrange_other 9.915 r_dihedral_angle_2_deg 9.811 r_dihedral_angle_1_deg 7.539 r_scangle_it 7.165 r_scangle_other 6.876 r_scbond_it 4.8 r_mcangle_it 4.661
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.227 r_dihedral_angle_3_deg 12.949 r_lrange_it 10.144 r_lrange_other 9.915 r_dihedral_angle_2_deg 9.811 r_dihedral_angle_1_deg 7.539 r_scangle_it 7.165 r_scangle_other 6.876 r_scbond_it 4.8 r_mcangle_it 4.661 r_mcangle_other 4.66 r_scbond_other 4.604 r_mcbond_it 3.337 r_mcbond_other 3.336 r_angle_refined_deg 1.741 r_angle_other_deg 0.495 r_nbd_refined 0.245 r_symmetry_nbd_other 0.207 r_nbtor_refined 0.2 r_xyhbond_nbd_refined 0.126 r_symmetry_nbd_refined 0.118 r_symmetry_nbtor_other 0.088 r_nbd_other 0.086 r_chiral_restr 0.065 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_symmetry_xyhbond_nbd_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3696 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 191
Software Software Software Name Purpose REFMAC refinement REFMAC refinement XDS data scaling PHASER phasing XDS data reduction