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Pa.FabF-C164Q in complex with 3-acetamido-4-methoxybenzoic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OC0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.20M ammonium formate and 31.2% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.14 42.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.924 α = 90 b = 64.631 β = 106.35 c = 84.39 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2021-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.976250 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 80.99 98.6 0.117 0.986 6.3 2.8 82149
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.71 98.4 1.13 0.359 1.3 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.68 46.91 77881 4248 98.26 0.17508 0.1738 0.188 0.19795 0.2072 RANDOM 24.831
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 0.36 -0.68 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.57 r_dihedral_angle_4_deg 13.663 r_dihedral_angle_3_deg 12.696 r_dihedral_angle_1_deg 7.142 r_long_range_B_refined 5.22 r_long_range_B_other 5.188 r_scangle_other 4.197 r_scbond_it 2.912 r_scbond_other 2.912 r_mcangle_other 2.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.57 r_dihedral_angle_4_deg 13.663 r_dihedral_angle_3_deg 12.696 r_dihedral_angle_1_deg 7.142 r_long_range_B_refined 5.22 r_long_range_B_other 5.188 r_scangle_other 4.197 r_scbond_it 2.912 r_scbond_other 2.912 r_mcangle_other 2.317 r_mcangle_it 2.316 r_mcbond_it 1.706 r_mcbond_other 1.705 r_angle_refined_deg 1.581 r_angle_other_deg 1.48 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6082 Nucleic Acid Atoms Solvent Atoms 410 Heterogen Atoms 166
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling PHASER phasing