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Rnase R bound to a 30S degradation intermediate (State I - head-turning)
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 80.717 r_long_range_B_other 80.716 r_mcangle_it 50.772 r_mcangle_other 50.772 r_scangle_other 41.709 r_mcbond_it 28.959 r_mcbond_other 28.957 r_scbond_it 24.186 r_scbond_other 24.185 r_dihedral_angle_3_deg 15
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 80.717 r_long_range_B_other 80.716 r_mcangle_it 50.772 r_mcangle_other 50.772 r_scangle_other 41.709 r_mcbond_it 28.959 r_mcbond_other 28.957 r_scbond_it 24.186 r_scbond_other 24.185 r_dihedral_angle_3_deg 15 r_dihedral_angle_2_deg 9.333 r_dihedral_angle_1_deg 8.402 r_angle_refined_deg 1.305 r_angle_other_deg 0.621 r_chiral_restr 0.06 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample 30S ribosomal subunit in complex with 3' exonuclease RNase R
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 6540 Reported Resolution (Å) 4.15 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.8.3 CTF CORRECTION RELION 3.1 INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 RECONSTRUCTION RELION 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2303673