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Human carbonic anhydrase I complexed with 4-(3-ethylureido)benzenesulfonamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JV0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 296 28-31% PEG4000, 0.2 M Sodium acetate, 0.1 M Tris pH 8.5-9.0
Crystal Properties Matthews coefficient Solvent content 2.32 47.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.27 α = 90 b = 70.98 β = 90 c = 121.58 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 0.9718 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 46.85 99.9 0.216 0.225 0.999 16.93 12 122663
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.37 98.7 0.839 2.34 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 1.335 46.85 122659 6144 99.875 0.143 0.1415 0.1427 0.1794 0.1804 18.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 0.723 -0.493
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.241 r_dihedral_angle_4_deg 18.542 r_dihedral_angle_3_deg 13.192 r_dihedral_angle_1_deg 7.194 r_rigid_bond_restr 4.716 r_scangle_it 4.401 r_scangle_other 4.4 r_lrange_it 4.076 r_lrange_other 4.076 r_scbond_it 3.995
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.241 r_dihedral_angle_4_deg 18.542 r_dihedral_angle_3_deg 13.192 r_dihedral_angle_1_deg 7.194 r_rigid_bond_restr 4.716 r_scangle_it 4.401 r_scangle_other 4.4 r_lrange_it 4.076 r_lrange_other 4.076 r_scbond_it 3.995 r_scbond_other 3.995 r_mcangle_other 2.593 r_mcangle_it 2.59 r_mcbond_it 2.332 r_mcbond_other 2.328 r_angle_refined_deg 2.037 r_angle_other_deg 1.589 r_nbd_refined 0.216 r_nbd_other 0.208 r_symmetry_nbd_other 0.196 r_symmetry_nbd_refined 0.191 r_nbtor_refined 0.176 r_symmetry_xyhbond_nbd_refined 0.157 r_xyhbond_nbd_refined 0.129 r_chiral_restr 0.12 r_symmetry_nbtor_other 0.09 r_metal_ion_refined 0.077 r_bond_refined_d 0.017 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4032 Nucleic Acid Atoms Solvent Atoms 504 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing