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The Fk1 domain of FKBP51 in complex with SAFit1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.27 45.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.625 α = 90 b = 48.493 β = 90 c = 57.474 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 37.091 99.7 0.051 0.062 0.034 0.996 12.1 5.8 29884
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.35 0.924 1.185 0.73 0.585 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.33 37.091 29834 1523 99.586 0.167 0.1654 0.164 0.2007 0.1986 18.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.464 -2.141 2.605
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.454 r_dihedral_angle_3_deg 13.31 r_dihedral_angle_1_deg 8.202 r_rigid_bond_restr 4.994 r_lrange_it 4.203 r_dihedral_angle_2_deg 3.953 r_lrange_other 3.595 r_mcangle_it 2.499 r_mcangle_other 2.497 r_scangle_it 2.375
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.454 r_dihedral_angle_3_deg 13.31 r_dihedral_angle_1_deg 8.202 r_rigid_bond_restr 4.994 r_lrange_it 4.203 r_dihedral_angle_2_deg 3.953 r_lrange_other 3.595 r_mcangle_it 2.499 r_mcangle_other 2.497 r_scangle_it 2.375 r_scangle_other 2.373 r_angle_refined_deg 1.916 r_mcbond_other 1.81 r_mcbond_it 1.809 r_scbond_it 1.777 r_scbond_other 1.775 r_chiral_restr_other 1.358 r_angle_other_deg 1.232 r_symmetry_nbd_refined 0.479 r_nbd_other 0.25 r_symmetry_xyhbond_nbd_refined 0.194 r_nbd_refined 0.19 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.092 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 950 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing