Navigation Tabs SFX structure of FutA bound to Fe(III)
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 294 Purified protein, diluted crystal seeds, and crystallisation buffer were mixed at a 1:1.5:1.5 ratio. Crystallisation buffer was 25% PEG 3350, 200 mM sodium thiocyanate. Crystal seed stock was diluted 1:20 in 25% PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.06 40.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.079 α = 90 b = 78.29 β = 97.358 c = 47.389 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD MPCCD 2019-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SACLA BEAMLINE BL2 1.127 SACLA BL2
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Fixed Target Diffraction ID Description Sample Holding Support Base Motion control Details Sample Solvent 1 Silicon nitride chip 25600 apertures
Measurement Diffraction ID Pulse Duration Pulse Repetition Rate Focal Spot Size Pulse Energy Photons Per Pulse 1 10 (fs) 30 undefined (KeV)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 30.1 99.8 0.99 0.053 12.1 618.7 37266 12.09
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.628 100 0.91 0.089 4.6 274.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.6 30.096 37266 1919 99.791 0.191 0.1903 0.2 0.208 0.22 17.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.025 -0.503 0.143 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.941 r_dihedral_angle_3_deg 14.497 r_dihedral_angle_4_deg 13.316 r_dihedral_angle_1_deg 6.147 r_lrange_it 5.386 r_lrange_other 5.382 r_scangle_it 4.497 r_scangle_other 4.496 r_scbond_it 2.861 r_scbond_other 2.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.941 r_dihedral_angle_3_deg 14.497 r_dihedral_angle_4_deg 13.316 r_dihedral_angle_1_deg 6.147 r_lrange_it 5.386 r_lrange_other 5.382 r_scangle_it 4.497 r_scangle_other 4.496 r_scbond_it 2.861 r_scbond_other 2.86 r_mcangle_it 2.605 r_mcangle_other 2.604 r_angle_refined_deg 1.76 r_mcbond_it 1.758 r_mcbond_other 1.753 r_angle_other_deg 1.461 r_symmetry_nbd_refined 0.236 r_symmetry_xyhbond_nbd_refined 0.235 r_nbd_other 0.233 r_nbd_refined 0.205 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.138 r_metal_ion_refined 0.116 r_chiral_restr 0.089 r_symmetry_nbtor_other 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2457 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling MOLREP phasing
