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14-3-3 in complex with PyrinpS208pS242
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.19 M CaCl 2 ,
5% glycerol, 26% PEG 400, 0.095 M HEPES, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.69 54.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.443 α = 90 b = 80.689 β = 90 c = 142.393 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.5 0.996 11.3 5.2 96682
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 0.676 0.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.6 49.923 96576 4865 99.478 0.181 0.1793 0.1928 0.213 0.2237 36.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.163 3.305 -2.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.575 r_dihedral_angle_4_deg 18.488 r_dihedral_angle_3_deg 13.83 r_lrange_it 8.392 r_lrange_other 8.232 r_scangle_it 6.802 r_scangle_other 6.801 r_dihedral_angle_1_deg 5.506 r_scbond_it 4.657 r_scbond_other 4.656
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.575 r_dihedral_angle_4_deg 18.488 r_dihedral_angle_3_deg 13.83 r_lrange_it 8.392 r_lrange_other 8.232 r_scangle_it 6.802 r_scangle_other 6.801 r_dihedral_angle_1_deg 5.506 r_scbond_it 4.657 r_scbond_other 4.656 r_mcangle_it 4.377 r_mcangle_other 4.372 r_mcbond_it 3.159 r_mcbond_other 3.139 r_angle_refined_deg 1.657 r_angle_other_deg 1.508 r_symmetry_nbd_refined 0.33 r_nbd_other 0.297 r_symmetry_xyhbond_nbd_refined 0.22 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.188 r_symmetry_nbd_other 0.17 r_nbtor_refined 0.168 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.084 r_chiral_restr_other 0.037 r_symmetry_xyhbond_nbd_other 0.035 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3794 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing