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Small molecule stabilizer for 14-3-3/ChREBP (Cmd1-soaking)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model 4JC3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH = 7.5
27% PEG400
0.19 M CaCl2
5% glycerol
Crystal Properties Matthews coefficient Solvent content 2.36 47.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.979 α = 90 b = 111.932 β = 90 c = 62.339 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033220 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.41 99.9 0.999 26 12.9 38129
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 0.959
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JC3 1.6 45.41 36253 1856 99.81 0.17305 0.17168 0.1906 0.19921 0.2139 RANDOM 17.901
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.3 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.429 r_long_range_B_refined 7.876 r_long_range_B_other 7.772 r_scangle_other 6.774 r_dihedral_angle_1_deg 5.597 r_scbond_it 5.11 r_scbond_other 5.108 r_mcangle_it 4.131 r_mcangle_other 4.129 r_dihedral_angle_2_deg 4.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.429 r_long_range_B_refined 7.876 r_long_range_B_other 7.772 r_scangle_other 6.774 r_dihedral_angle_1_deg 5.597 r_scbond_it 5.11 r_scbond_other 5.108 r_mcangle_it 4.131 r_mcangle_other 4.129 r_dihedral_angle_2_deg 4.077 r_mcbond_it 2.957 r_mcbond_other 2.914 r_angle_refined_deg 1.31 r_angle_other_deg 0.526 r_chiral_restr 0.061 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1998 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling MOLREP phasing