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COAGULATION FACTOR XI PROTEASE DOMAIN IN COMPLEX WITH ACTIVE SITE INHIBITOR 34
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Other in house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1M citrate buffer pH 4.5 and 20-30% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.29 46.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.76 α = 90 b = 60.67 β = 90 c = 67.47 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 16M 2022-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) 0.9762 PETRA III, EMBL c/o DESY P14 (MX2)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 42.575 99.3 0.081 0.999 17.09 13.3 68020
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.3 0.785 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT in house model 1.25 42.575 68019 3401 99.309 0.119 0.1172 0.121 0.157 0.1577 19.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.058 0.429 -0.487
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.837 r_dihedral_angle_4_deg 16.831 r_dihedral_angle_3_deg 11.857 r_dihedral_angle_1_deg 6.827 r_rigid_bond_restr 4.807 r_scangle_other 4.314 r_scangle_it 4.313 r_lrange_it 4.129 r_scbond_other 3.998 r_scbond_it 3.964
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.837 r_dihedral_angle_4_deg 16.831 r_dihedral_angle_3_deg 11.857 r_dihedral_angle_1_deg 6.827 r_rigid_bond_restr 4.807 r_scangle_other 4.314 r_scangle_it 4.313 r_lrange_it 4.129 r_scbond_other 3.998 r_scbond_it 3.964 r_lrange_other 3.937 r_mcangle_other 1.865 r_mcangle_it 1.858 r_angle_refined_deg 1.811 r_mcbond_it 1.672 r_angle_other_deg 1.566 r_mcbond_other 1.461 r_symmetry_nbd_refined 0.284 r_nbd_other 0.229 r_nbd_refined 0.202 r_symmetry_nbd_other 0.195 r_nbtor_refined 0.177 r_symmetry_xyhbond_nbd_refined 0.172 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.104 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms Solvent Atoms 319 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing