X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP829325 %v/v PEGSH (Precipitant) 10 %v/v Glycerol (Precipitant) 0.2 M MgCl2 (Salt) 0.1 M TRIS 8 pH (Buffer)
Crystal Properties
Matthews coefficientSolvent content
2.0941.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 193.253α = 90
b = 55.793β = 114.09
c = 122.843γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2022-04-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.9179DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.61112.231000.3490.3610.0920.9965.515.636877
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.612.661006.3296.5441.650.3290.315.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1R422.6158.7534960182799.330.259030.255480.32464RANDOM72.392
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.46-0.828.44-5.18
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg18.041
r_dihedral_angle_2_deg12.683
r_long_range_B_refined11.943
r_long_range_B_other11.943
r_mcangle_it8.142
r_mcangle_other8.142
r_scangle_other6.841
r_dihedral_angle_1_deg6.378
r_mcbond_it5.231
r_mcbond_other5.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg18.041
r_dihedral_angle_2_deg12.683
r_long_range_B_refined11.943
r_long_range_B_other11.943
r_mcangle_it8.142
r_mcangle_other8.142
r_scangle_other6.841
r_dihedral_angle_1_deg6.378
r_mcbond_it5.231
r_mcbond_other5.23
r_scbond_it4.297
r_scbond_other4.297
r_angle_refined_deg1.309
r_angle_other_deg0.477
r_chiral_restr0.076
r_bond_refined_d0.005
r_gen_planes_refined0.005
r_gen_planes_other0.002
r_bond_other_d0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10013
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
xia2data scaling
DIALSdata reduction
PHASERphasing