☰ Navigation Tabs
CRYSTAL STRUCTURE OF HUMAN SOLUBLE ADENYLYL CYCLASE IN COMPLEX WITH THE INHIBITOR TDI-011861
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CLF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.1 M sodiumacetate, 0.2 M trisodiumcitrate, 15% PEG4000, 10% Glycerol, 277 K
Crystal Properties Matthews coefficient Solvent content 2.61 52.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.131 α = 90 b = 100.131 β = 90 c = 97.889 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 48.944 96 0.204 0.216 0.994 6.78 8.44 47921 31.513
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.93 77.5 1.814 2.24 0.14 0.29 2.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4CLF 1.82 48.944 47883 2098 95.875 0.205 0.2027 0.2101 0.2457 0.2499 32.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.299 0.15 0.299 -0.971
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.908 r_dihedral_angle_6_deg 15.313 r_lrange_it 7.982 r_lrange_other 7.946 r_dihedral_angle_1_deg 6.879 r_scangle_it 5.079 r_scangle_other 5.078 r_mcangle_other 4.633 r_mcangle_it 4.632 r_dihedral_angle_2_deg 4.543
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.908 r_dihedral_angle_6_deg 15.313 r_lrange_it 7.982 r_lrange_other 7.946 r_dihedral_angle_1_deg 6.879 r_scangle_it 5.079 r_scangle_other 5.078 r_mcangle_other 4.633 r_mcangle_it 4.632 r_dihedral_angle_2_deg 4.543 r_scbond_it 3.3 r_scbond_other 3.299 r_mcbond_it 2.929 r_mcbond_other 2.927 r_chiral_restr_other 2.268 r_angle_refined_deg 1.431 r_angle_other_deg 0.516 r_symmetry_nbd_refined 0.28 r_nbd_refined 0.233 r_symmetry_xyhbond_nbd_refined 0.226 r_nbd_other 0.225 r_symmetry_nbd_other 0.193 r_symmetry_xyhbond_nbd_other 0.182 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.174 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3677 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing