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C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 7,8-dimethoxy-1,3-dimethyl-1,3-dihydro-2H-benzo[d]azepin-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in hosue
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 30% PEG 300, 0.1M MES buffer pH6.5
Crystal Properties Matthews coefficient Solvent content 2.24 45.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.793 α = 90 b = 52.4 β = 90 c = 31.972 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 199 CCD RIGAKU SATURN A200 2015-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 31.992 96.9 0.018 0.998 35.7 2.9 15915
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 83.3 0.075 0.801 9.6 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE in hosue 1.604 31.992 15820 761 96.205 0.148 0.1465 0.1605 0.1788 0.1891 16.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.112 0.187 -0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.201 r_dihedral_angle_4_deg 20.021 r_dihedral_angle_3_deg 10.615 r_lrange_it 5.244 r_lrange_other 5.243 r_dihedral_angle_1_deg 4.667 r_scangle_it 2.141 r_scangle_other 2.14 r_angle_other_deg 1.323 r_scbond_it 1.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.201 r_dihedral_angle_4_deg 20.021 r_dihedral_angle_3_deg 10.615 r_lrange_it 5.244 r_lrange_other 5.243 r_dihedral_angle_1_deg 4.667 r_scangle_it 2.141 r_scangle_other 2.14 r_angle_other_deg 1.323 r_scbond_it 1.274 r_scbond_other 1.273 r_mcangle_other 1.263 r_mcangle_it 1.262 r_angle_refined_deg 1.216 r_mcbond_it 0.726 r_mcbond_other 0.717 r_nbd_refined 0.207 r_symmetry_nbd_other 0.173 r_nbtor_refined 0.172 r_symmetry_nbd_refined 0.148 r_nbd_other 0.136 r_xyhbond_nbd_refined 0.103 r_symmetry_xyhbond_nbd_refined 0.085 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.068 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 923 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling