☰ Navigation Tabs
Crystal structure of GSK3 beta (GSK3b) in complex with FL291.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q3D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277.15 14% PEG 3350, 0.1 M ammonium sulfate and 0.1 M bis-tris pH 6.0
Crystal Properties Matthews coefficient Solvent content 3.09 60.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.417 α = 90 b = 114.88 β = 99.37 c = 67.53 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.66 66.63 99.9 0.073 0.103 0.054 0.997 10.9 3.5 29204
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.66 2.8 99.9 0.545 0.759 0.392 0.534 2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1q3d 2.66 66.63 27720 1455 99.4 0.1717 0.1688 0.172 0.2291 0.226 RANDOM 68.211
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -31.52 -9.72 42.34 -10.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.575 r_dihedral_angle_4_deg 23.985 r_dihedral_angle_3_deg 15.639 r_dihedral_angle_1_deg 7.864 r_angle_refined_deg 1.197 r_angle_other_deg 1.07 r_chiral_restr 0.045 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.575 r_dihedral_angle_4_deg 23.985 r_dihedral_angle_3_deg 15.639 r_dihedral_angle_1_deg 7.864 r_angle_refined_deg 1.197 r_angle_other_deg 1.07 r_chiral_restr 0.045 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5584 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 60
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing