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Anaplastic Lymphoma Kinase with a novel carboline inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CLI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 286 0.15 M ammonium sulphate, 9-10.5% monomethyl ether poly (ethylene glycol) (MW 5000), and 0.1 M MES buffer pH 5.3 - 5.6
Crystal Properties Matthews coefficient Solvent content 2.1 41.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.714 α = 90 b = 56.593 β = 90 c = 103.243 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9159 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.645 46.281 94 0.069 0.076 0.03 0.999 12.7 6.3 26023
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.645 1.821 58.7 1.287 1.416 0.583 0.35 1.6 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 4CLI 1.645 46.281 26023 1349 69.282 0.198 0.1966 0.2287 0.2381 40.512
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.102 -0.302 0.404
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.118 r_dihedral_angle_2_deg 16.4 r_dihedral_angle_6_deg 16.257 r_lrange_other 10.294 r_lrange_it 10.292 r_scangle_it 6.819 r_scangle_other 6.817 r_dihedral_angle_1_deg 6.297 r_mcangle_it 5.086 r_mcangle_other 5.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.118 r_dihedral_angle_2_deg 16.4 r_dihedral_angle_6_deg 16.257 r_lrange_other 10.294 r_lrange_it 10.292 r_scangle_it 6.819 r_scangle_other 6.817 r_dihedral_angle_1_deg 6.297 r_mcangle_it 5.086 r_mcangle_other 5.086 r_scbond_it 4.369 r_scbond_other 4.367 r_mcbond_it 3.312 r_mcbond_other 3.31 r_angle_refined_deg 1.536 r_angle_other_deg 0.525 r_nbd_refined 0.218 r_symmetry_nbd_other 0.198 r_symmetry_nbd_refined 0.192 r_nbd_other 0.185 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.151 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.077 r_symmetry_xyhbond_nbd_refined 0.031 r_chiral_restr_other 0.014 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2119 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction autoPROC data scaling MOLREP phasing