8AOU | pdb_00008aou

Solution NMR structure of full-length Nsp1 from SARS-CoV-2.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
22D 1H-15N HSQC600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
33D HNCO600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
43D HNCO600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
53D HNCA600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
63D HNCACB600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
73D HN(CO)CA600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
83D HN(COCA)CB600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
93D HN(CA)CO600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
103D HCCH-TOCSY600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
113D H(CCO)NH600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
123D HBHA(CO)NH600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
133D HA(CO)NH600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
143D HC(C)H-TOCSY (aromatics)600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
153D (H)CCH-TOCSY (aromatics)600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
162D (HB)CB(CGCD)HD600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
172D (HB)CB(CGCDCE)HE600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
182D 1H-13C HSQC600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 600
192D 1H-13C HSQC600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
202D CT 1H-13C HSQC (aliphatics)600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
212D CT 1H-13C HSQC (aromatics)600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
222D CT 1H-13C HSQC (methyls)500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
233D NOESY-15N HSQC600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
243D NOESY-13C HSQC600 uM [U-13C; U-15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
25CLEANEX500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
262D SCT 1H-15N HSQC500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
272D 1H-15N TROSY-HSQC500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
282D IPAP 1H-15N HSQC500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/v sodium azide, 10 % v/v [U-2H] D2O90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
292D SCT 1H-15N HSQC500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/w sodium azide, 10 % v/v [U-2H] D2O, 12 mg/mL Pf1 phage90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
302D 1H-15N TROSY-HSQC500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/w sodium azide, 10 % v/v [U-2H] D2O, 12 mg/mL Pf1 phage90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
312D IPAP 1H-15N HSQC500 uM [U-10% 13C; U-100% 15N] Nsp1, 50 mM sodium phosphate, 200 mM sodium chloride, 2 mM DTT, 2 mM EDTA, 0.01 % w/w sodium azide, 10 % v/v [U-2H] D2O, 12 mg/mL Pf1 phage90% H2O/10% D2O560 mM6.51 atm298Bruker AVANCE III HD 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD600
2BrukerAVANCE III HD850
NMR Refinement
MethodDetailsSoftware
simulated annealingTopSpin
torsion angle dynamicsNMRPipe
molecular dynamicsCcpNmr Analysis
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingNMRPipe10.1Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentCcpNmr Analysis2.4CCPN
4peak pickingCcpNmr Analysis2.4CCPN
5data analysisCcpNmr Analysis2.4CCPN
6structure calculationARIA2.3Linge, O'Donoghue and Nilges
7structure calculationCNS1.21Brunger, Adams, Clore, Gros, Nilges and Read