☰ Navigation Tabs
E329A Mutant Thermogutta terrifontis endoglucanase catalytic domain with C-linker from glycoside hydrolase family 5 (TtEnd5A-CDC-E329A)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8AG9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 0.2M NH4Cl and 20%W/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.16 43.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.39 α = 90 b = 69.59 β = 90 c = 81.92 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 12M 2021-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.13 69.59 96.8 0.045 0.047 0.013 1 18.9 11.6 125321 13.69
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.13 1.16 75.2 1.646 0.392 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 8AG9 1.2 69.59 108042 5308 99.712 0.121 0.1199 0.1204 0.1484 0.1485 16.638
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.468 -0.339 0.808
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.245 r_dihedral_angle_4_deg 19.653 r_dihedral_angle_3_deg 10.815 r_dihedral_angle_1_deg 6.407 r_lrange_it 2.671 r_lrange_other 2.336 r_scangle_other 1.947 r_scangle_it 1.945 r_scbond_it 1.571 r_scbond_other 1.569
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.245 r_dihedral_angle_4_deg 19.653 r_dihedral_angle_3_deg 10.815 r_dihedral_angle_1_deg 6.407 r_lrange_it 2.671 r_lrange_other 2.336 r_scangle_other 1.947 r_scangle_it 1.945 r_scbond_it 1.571 r_scbond_other 1.569 r_angle_other_deg 1.5 r_angle_refined_deg 1.436 r_mcangle_other 1.354 r_mcangle_it 1.353 r_rigid_bond_restr 1.19 r_mcbond_it 1.004 r_mcbond_other 0.999 r_symmetry_xyhbond_nbd_refined 0.441 r_nbd_refined 0.224 r_nbd_other 0.196 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.148 r_symmetry_nbd_refined 0.139 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.075 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2719 Nucleic Acid Atoms Solvent Atoms 375 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing