8AH0

BK Polyomavirus VP1 mutant VQQ

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293.15	PEG 3.350 Lithium Chloride HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.32	47.04

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 144.691	α = 90
b = 152.596	β = 90
c = 62.746	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2021-09-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.798	50	99.9	0.999	13.4	13.4		129677

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.798	1.862			0.576

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4MJ1	1.798	48.463	129673	6484	99.921	0.173	0.1716	0.2097	26.89

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.359			-0.024		-0.335

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.991
r_dihedral_angle_4_deg	21.176
r_dihedral_angle_3_deg	13.2
r_dihedral_angle_1_deg	7.482
r_lrange_it	5.736
r_lrange_other	5.715
r_scangle_it	4.517
r_scangle_other	4.516
r_mcangle_it	3.318
r_mcangle_other	3.317
r_scbond_it	3.073
r_scbond_other	3.073
r_mcbond_it	2.399
r_mcbond_other	2.397
r_angle_refined_deg	1.647
r_angle_other_deg	1.356
r_nbd_other	0.223
r_nbd_refined	0.2
r_symmetry_nbd_other	0.182
r_symmetry_nbd_refined	0.181
r_nbtor_refined	0.162
r_symmetry_xyhbond_nbd_refined	0.155
r_xyhbond_nbd_refined	0.147
r_symmetry_xyhbond_nbd_other	0.083
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.077
r_bond_refined_d	0.011
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9839
Nucleic Acid Atoms
Solvent Atoms	666
Heterogen Atoms	53

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
REFMAC	phasing
Coot	model building
XSCALE	data scaling