8AGO

BK Polyomavirus VP1 mutant E73Q

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293.15	PEG 3.350 Lithium Chloride HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.34	47.49

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 145.253	α = 90
b = 153.039	β = 90
c = 62.801	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M-F		2019-04-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.853	50	99.6	0.999	13.99	13.2		119532

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.853	1.919			0.737

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	4MJ1	1.853	48.545	119147	5959	99.602	0.192	0.1902	0.229	28.682

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.062			1.152		-0.089

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.74
r_dihedral_angle_4_deg	22.902
r_dihedral_angle_3_deg	12.943
r_dihedral_angle_1_deg	7.679
r_lrange_it	5.173
r_lrange_other	5.123
r_scangle_it	3.958
r_scangle_other	3.958
r_mcangle_it	3.233
r_mcangle_other	3.232
r_scbond_it	2.744
r_scbond_other	2.744
r_mcbond_it	2.339
r_mcbond_other	2.339
r_angle_refined_deg	1.601
r_angle_other_deg	1.307
r_symmetry_nbd_refined	0.22
r_nbd_other	0.207
r_nbd_refined	0.202
r_symmetry_nbd_other	0.177
r_symmetry_xyhbond_nbd_refined	0.174
r_nbtor_refined	0.161
r_xyhbond_nbd_refined	0.151
r_symmetry_nbtor_other	0.079
r_chiral_restr	0.071
r_symmetry_xyhbond_nbd_other	0.057
r_bond_refined_d	0.009
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9766
Nucleic Acid Atoms
Solvent Atoms	841
Heterogen Atoms	23

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
REFMAC	phasing
Coot	model building
XSCALE	data scaling