☰ Navigation Tabs
Thermogutta terrifontis endoglucanase of glycoside hydrolase family 5 (TtEnd5A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293.15 0.2 M (NH4)2SO4 , 0.1 M HEPES Buffer, 25 %w/v PEG 3350 as precipitant, and protein concentration was 0.18 mM
Crystal Properties Matthews coefficient Solvent content 2.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.851 α = 90 b = 69.442 β = 90 c = 81.094 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 12M 2020-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9795 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 48.18 70.24 0.048 0.051 0.014 0.999 32.2 11.2 386442
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 9.1 0.371 0.499 0.33 0.8 1.1 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.56 48.156 34303 1712 70.244 0.142 0.1405 0.154 0.1699 0.1837 17.724
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.453 -0.515 1.969
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.283 r_dihedral_angle_3_deg 12.97 r_dihedral_angle_2_deg 9.477 r_dihedral_angle_1_deg 6.628 r_lrange_it 6.137 r_lrange_other 6.047 r_scangle_it 4.899 r_scangle_other 4.879 r_scbond_it 3.338 r_scbond_other 3.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.283 r_dihedral_angle_3_deg 12.97 r_dihedral_angle_2_deg 9.477 r_dihedral_angle_1_deg 6.628 r_lrange_it 6.137 r_lrange_other 6.047 r_scangle_it 4.899 r_scangle_other 4.879 r_scbond_it 3.338 r_scbond_other 3.323 r_mcangle_other 2.655 r_mcangle_it 2.652 r_mcbond_it 1.86 r_mcbond_other 1.851 r_angle_refined_deg 1.186 r_angle_other_deg 0.427 r_nbd_other 0.228 r_nbd_refined 0.227 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.182 r_symmetry_nbd_refined 0.176 r_symmetry_xyhbond_nbd_refined 0.154 r_xyhbond_nbd_refined 0.141 r_symmetry_nbtor_other 0.075 r_chiral_restr 0.061 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2732 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing