☰ Navigation Tabs
Crystal Structure of Human Parechovirus 3 2A protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ZTW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.7 M Ammonium sulphate,
0.05 M Sodium Cacodylate pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.48 50.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.68 α = 90 b = 141.68 β = 90 c = 183.88 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-10-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 102 100 0.11 1 22.86 10.2 61983
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.34 1.117 0.59
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7ZTW 2.29 73.576 61971 3220 99.971 0.18 0.1783 0.1801 0.2144 0.2082 75.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.792 3.792 -7.584
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.019 r_dihedral_angle_4_deg 18.586 r_dihedral_angle_3_deg 15.101 r_lrange_it 8.018 r_lrange_other 8.017 r_dihedral_angle_1_deg 6.875 r_scangle_it 5.299 r_scangle_other 5.262 r_mcangle_it 4.684 r_mcangle_other 4.684
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.019 r_dihedral_angle_4_deg 18.586 r_dihedral_angle_3_deg 15.101 r_lrange_it 8.018 r_lrange_other 8.017 r_dihedral_angle_1_deg 6.875 r_scangle_it 5.299 r_scangle_other 5.262 r_mcangle_it 4.684 r_mcangle_other 4.684 r_scbond_it 3.504 r_scbond_other 3.461 r_mcbond_it 3.163 r_mcbond_other 3.163 r_angle_refined_deg 1.318 r_angle_other_deg 1.226 r_nbd_other 0.247 r_nbd_refined 0.199 r_symmetry_nbd_other 0.179 r_symmetry_xyhbond_nbd_refined 0.168 r_nbtor_refined 0.162 r_xyhbond_nbd_refined 0.149 r_symmetry_nbd_refined 0.149 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.054 r_symmetry_xyhbond_nbd_other 0.05 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9030 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing