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Structure of HDAC2 complexed with an inhibitory ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 39% PEG 300
0.1M pH=8.4 CHES/NaOH
Crystal Properties Matthews coefficient Solvent content 1.91 35.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.247 α = 90 b = 98.847 β = 90 c = 140.77 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.52 80.9 100 0.086 11.8 6.6 199750
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.52 1.55 0.749
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.52 80.9 189620 9932 100 0.1541 0.1531 0.1679 0.1736 0.1852 RANDOM 22.558
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.29 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.809 r_dihedral_angle_4_deg 18.75 r_dihedral_angle_3_deg 12.02 r_dihedral_angle_1_deg 9.505 r_angle_refined_deg 1.385 r_angle_other_deg 0.518 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_bond_other_d 0.001 r_gen_planes_refined 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.809 r_dihedral_angle_4_deg 18.75 r_dihedral_angle_3_deg 12.02 r_dihedral_angle_1_deg 9.505 r_angle_refined_deg 1.385 r_angle_other_deg 0.518 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8888 Nucleic Acid Atoms Solvent Atoms 838 Heterogen Atoms 416
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling REFMAC phasing