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Heterogeneous nuclear ribonucleoprotein H1, qRRM2 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 KI 200 mM
PEG 3350 20%
Crystal Properties Matthews coefficient Solvent content 2.53 51.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.295 α = 90 b = 81.295 β = 90 c = 30.322 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2022-01-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.88560 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.075 70.404 96.5 0.999 12.2 9.6 48313
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.075 1.09 99.8 0.304 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.075 70.404 48292 2455 96.445 0.168 0.1659 0.2008 0.2116 27.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.165 0.582 1.165 -3.778
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.123 r_dihedral_angle_4_deg 17.557 r_dihedral_angle_3_deg 13.696 r_dihedral_angle_1_deg 7.659 r_lrange_it 5.268 r_lrange_other 5.005 r_scangle_other 4.093 r_scangle_it 4.079 r_scbond_other 3.804 r_scbond_it 3.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.123 r_dihedral_angle_4_deg 17.557 r_dihedral_angle_3_deg 13.696 r_dihedral_angle_1_deg 7.659 r_lrange_it 5.268 r_lrange_other 5.005 r_scangle_other 4.093 r_scangle_it 4.079 r_scbond_other 3.804 r_scbond_it 3.782 r_mcangle_it 3.35 r_mcangle_other 3.349 r_rigid_bond_restr 3.186 r_mcbond_other 2.517 r_mcbond_it 2.513 r_angle_refined_deg 1.715 r_angle_other_deg 1.387 r_symmetry_xyhbond_nbd_refined 0.232 r_nbd_refined 0.217 r_nbd_other 0.215 r_symmetry_nbd_other 0.2 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.174 r_symmetry_nbd_refined 0.124 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 690 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling CRANK2 phasing Coot model building