7ZLF

Mutant L39Y-L58F of recombinant bovine beta-lactoglobulin in complex with endogenous fatty acid


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52932.4 M in 0.5 M Tris-HCl, pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.4850.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.245α = 90
b = 53.245β = 90
c = 111.21γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAGILENT ATLAS CCD2018-10-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEAgilent SuperNova1.54056

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.115.2199.60.1130.1220.9988.96.711150
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1699.71.0461.1810.6311.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1BSY2.115.2111128105299.3570.1960.19120.237438.259
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.3970.1980.397-1.287
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.708
r_dihedral_angle_3_deg17.725
r_dihedral_angle_4_deg12.936
r_dihedral_angle_1_deg6.98
r_lrange_it6.147
r_lrange_other6.125
r_scangle_it4.041
r_scangle_other4.023
r_mcangle_it3.17
r_mcangle_other3.169
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.708
r_dihedral_angle_3_deg17.725
r_dihedral_angle_4_deg12.936
r_dihedral_angle_1_deg6.98
r_lrange_it6.147
r_lrange_other6.125
r_scangle_it4.041
r_scangle_other4.023
r_mcangle_it3.17
r_mcangle_other3.169
r_scbond_it2.477
r_scbond_other2.454
r_mcbond_it2.013
r_mcbond_other2.003
r_angle_refined_deg1.629
r_angle_other_deg1.248
r_symmetry_nbd_refined0.234
r_nbd_other0.231
r_nbd_refined0.2
r_symmetry_xyhbond_nbd_refined0.193
r_symmetry_nbd_other0.191
r_xyhbond_nbd_refined0.181
r_nbtor_refined0.161
r_symmetry_nbtor_other0.079
r_chiral_restr0.072
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1216
Nucleic Acid Atoms
Solvent Atoms61
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement
CrysalisProdata reduction
Aimlessdata scaling
PHASERphasing