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Conversion of indole-3-acetic acid into indole-3-aldehyde in bacteria Metabolic network of tryptophan around the indole-3-aldehyde formation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 1.0 M lithium sulfate, 0.1 M sodium citrate (pH 5.6) and 0.5 M Ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 3.07 59.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.179 α = 90 b = 135.179 β = 90 c = 83.979 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.9792 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 67.59 92.5 0.163 0.168 0.04 0.98 14.9 17.6 36030
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.87 58.2 2.304 2.41 0.655 0.372 1.3 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MIR NONE 1.83 67.589 36030 1800 46.201 0.204 0.2018 0.2018 0.2376 0.2366 22.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.458 0.229 0.458 -1.486
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.994 r_dihedral_angle_3_deg 12.356 r_dihedral_angle_2_deg 11.513 r_dihedral_angle_1_deg 7.625 r_lrange_it 4.811 r_lrange_other 4.795 r_scangle_it 3.653 r_scangle_other 3.648 r_mcangle_it 2.681 r_mcangle_other 2.681
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.994 r_dihedral_angle_3_deg 12.356 r_dihedral_angle_2_deg 11.513 r_dihedral_angle_1_deg 7.625 r_lrange_it 4.811 r_lrange_other 4.795 r_scangle_it 3.653 r_scangle_other 3.648 r_mcangle_it 2.681 r_mcangle_other 2.681 r_scbond_it 2.372 r_scbond_other 2.367 r_mcbond_it 1.864 r_mcbond_other 1.863 r_angle_refined_deg 1.503 r_angle_other_deg 0.569 r_symmetry_xyhbond_nbd_refined 0.203 r_nbd_refined 0.195 r_symmetry_nbd_refined 0.192 r_nbtor_refined 0.171 r_nbd_other 0.171 r_symmetry_nbd_other 0.17 r_xyhbond_nbd_refined 0.143 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4984 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling MOLREP phasing