X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP72930.1M Tris-HCl, pH 7.0, 0.2M calcium acetate hydrate, 20% (w/v) PEG 3000
Crystal Properties
Matthews coefficientSolvent content
2.5150.94

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.41α = 90
b = 92.77β = 96.615
c = 218.111γ = 90
Symmetry
Space GroupI 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2021-11-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPAL/PLS BEAMLINE 5C (4A)0.97949PAL/PLS5C (4A)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1228.4998.70.99916.16.971847
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.040.540.961

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEmodel228.4971845359198.7180.1940.19170.234940.693
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0120.003
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.683
r_dihedral_angle_3_deg15.459
r_dihedral_angle_4_deg14.971
r_dihedral_angle_1_deg7.172
r_lrange_it6.561
r_lrange_other6.538
r_scangle_it5.435
r_scangle_other5.435
r_mcangle_it4.001
r_mcangle_other4.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.683
r_dihedral_angle_3_deg15.459
r_dihedral_angle_4_deg14.971
r_dihedral_angle_1_deg7.172
r_lrange_it6.561
r_lrange_other6.538
r_scangle_it5.435
r_scangle_other5.435
r_mcangle_it4.001
r_mcangle_other4.001
r_scbond_it3.642
r_scbond_other3.642
r_mcbond_it2.988
r_mcbond_other2.988
r_angle_refined_deg1.565
r_angle_other_deg1.319
r_symmetry_nbd_refined0.383
r_nbd_other0.236
r_nbd_refined0.204
r_symmetry_xyhbond_nbd_other0.184
r_symmetry_nbd_other0.183
r_nbtor_refined0.162
r_xyhbond_nbd_refined0.157
r_symmetry_xyhbond_nbd_refined0.116
r_symmetry_nbtor_other0.078
r_chiral_restr0.073
r_bond_refined_d0.008
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7572
Nucleic Acid Atoms
Solvent Atoms496
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing