☰ Navigation Tabs
Solution structure of homeodomain of EXTRADENTICLE
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 2 2D 1H-13C HSQC 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 3 3D 1H-15N NOESY 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 4 3D HBHA(CO)NH 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 5 3D 1H-13C NOESY aliphatic 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 6 3D 1H-13C NOESY aromatic 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 8 3D HCCH-TOCSY 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 9 3D 1H-15N TOCSY 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 10 3D H(CCO)NH 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 11 3D HNCO 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 12 3D HN(CO)CA 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 13 3D CBCA(CO)NH 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600 14 3D HNCACB 0.6 mM [U-13C; U-15N] Homeobox protein Extradenticle 90% H2O/10% D2O 50 mM 5.5 1 atm 298 Bruker AscendTM 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AscendTM 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing PONDEROSA-C/S
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 4 collection TopSpin Bruker Biospin 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 data analysis NMRFAM-SPARKY Lee, Tonelli and Markley 7 structure calculation PONDEROSA-C/S Lee, Stark and Markley