☰ Navigation Tabs
Human Estrogen Receptor beta Ligand-binding Domain in Complex with (R)-2-(2-chloro-4-hydroxyphenyl)-3-(4-hydroxyphenyl)propanenitrile
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GIU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 16-20% PEG3350, 100 mM BisTris pH6.5, 200 mM Magnesium Acetate
Crystal Properties Matthews coefficient Solvent content 2.01 38.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.002 α = 90 b = 88.944 β = 90 c = 101.094 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 46.24 92 0.999 28.9 5.7 35187
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 1.93 0.558
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2giu 1.89 46.24 33371 1756 91.83 0.1991 0.197 0.2043 0.2393 0.2414 RANDOM 22.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 -0.17 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.997 r_dihedral_angle_4_deg 18.426 r_dihedral_angle_3_deg 13.484 r_dihedral_angle_1_deg 5.377 r_mcangle_it 3.066 r_angle_other_deg 2.306 r_mcbond_it 2.161 r_mcbond_other 2.159 r_angle_refined_deg 1.563 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.997 r_dihedral_angle_4_deg 18.426 r_dihedral_angle_3_deg 13.484 r_dihedral_angle_1_deg 5.377 r_mcangle_it 3.066 r_angle_other_deg 2.306 r_mcbond_it 2.161 r_mcbond_other 2.159 r_angle_refined_deg 1.563 r_chiral_restr 0.079 r_bond_other_d 0.035 r_gen_planes_other 0.013 r_bond_refined_d 0.01 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3540 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction xia2 data scaling MOLREP phasing