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Formate dehydrogenase (FDH) from Methylobacterium extorquens AM1 (MeFDH1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7E5Z
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.456 f_angle_d 0.534 f_chiral_restr 0.043 f_plane_restr 0.005 f_bond_d 0.003
Sample Formate dehydrogenase (FDH) from Methylobacterium extorquens AM1 (MeFDH1) Sample Components Alpha subunit of formate dehydrogenase (FDH) from Methylobacterium extorquens AM1 (MeFDH1) Beta subunit of formate dehydrogenase (FDH) from Methylobacterium extorquens AM1 (MeFDH1)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details blot for 3 seconds
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 453262 Reported Resolution (Å) 2.83 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (7E5Z) Refinement Space RECIPROCAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value 136.6 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 92000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU MODEL FITTING cryoSPARC 3.2 INITIAL EULER ASSIGNMENT cryoSPARC 3.2 FINAL EULER ASSIGNMENT cryoSPARC 3.2 CLASSIFICATION cryoSPARC 3.2 RECONSTRUCTION cryoSPARC 3.2 MODEL REFINEMENT PHENIX 1.19
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 2188878