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CYS179 and CYS504 of CRMP2 were covalently binded by a Sesquiterpene lactone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GSE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 Sodium chloride, 0.1 M Bis-tris Ph5.5; 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.77 55.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.649 α = 90 b = 113.649 β = 90 c = 196.585 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2015-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.97677 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 98.42 100 0.031 23.75 1 59704
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 0.436 0.763
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2gse 1.8 29.027 59669 3113 99.925 0.178 0.1762 0.1785 0.2135 0.2157 35.477
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.473 1.473 -2.945
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.455 r_dihedral_angle_4_deg 18.818 r_dihedral_angle_3_deg 15.398 r_lrange_it 7.217 r_dihedral_angle_1_deg 6.791 r_scangle_it 6.268 r_scbond_it 4.568 r_mcangle_it 4.043 r_mcbond_it 3.073 r_angle_refined_deg 1.673
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.455 r_dihedral_angle_4_deg 18.818 r_dihedral_angle_3_deg 15.398 r_lrange_it 7.217 r_dihedral_angle_1_deg 6.791 r_scangle_it 6.268 r_scbond_it 4.568 r_mcangle_it 4.043 r_mcbond_it 3.073 r_angle_refined_deg 1.673 r_nbtor_refined 0.312 r_symmetry_nbd_refined 0.257 r_nbd_refined 0.221 r_symmetry_xyhbond_nbd_refined 0.206 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.121 r_bond_refined_d 0.01 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3779 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction Aimless data scaling MOLREP phasing