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Helicoverpa armigera pheromone-binding protein PBP1 at pH 7.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FJY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 peg
Crystal Properties Matthews coefficient Solvent content 1.73 28.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.03 α = 90 b = 32.604 β = 97.884 c = 54.792 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2014-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9792 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 93.1 0.066 0.985 17.7 4.3 27772
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 0.5 0.912
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2FJY 1.3 20.866 2 22332 1108 80.328 0.18 0.1797 0.1787 0.1792 0.1976 0.1817 RANDOM 20.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.156 -1.412 -1.523 1.993
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.934 r_dihedral_angle_4_deg 12.835 r_dihedral_angle_3_deg 11.704 r_dihedral_angle_1_deg 4.632 r_rigid_bond_restr 3.227 r_lrange_it 2.869 r_lrange_other 2.863 r_scangle_it 2.566 r_scangle_other 2.564 r_mcangle_other 2.349
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.934 r_dihedral_angle_4_deg 12.835 r_dihedral_angle_3_deg 11.704 r_dihedral_angle_1_deg 4.632 r_rigid_bond_restr 3.227 r_lrange_it 2.869 r_lrange_other 2.863 r_scangle_it 2.566 r_scangle_other 2.564 r_mcangle_other 2.349 r_mcangle_it 2.341 r_scbond_it 2.183 r_scbond_other 2.183 r_mcbond_it 1.792 r_mcbond_other 1.736 r_angle_other_deg 1.482 r_angle_refined_deg 1.378 r_symmetry_nbd_refined 0.28 r_nbd_other 0.267 r_nbd_refined 0.226 r_symmetry_xyhbond_nbd_refined 0.187 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.165 r_xyhbond_nbd_refined 0.163 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1048 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling BALBES phasing