Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
trimolecular G-quadruplexes consists of a hairpin motif and two short chains
SOLID-STATE NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D NOESY
4.0 mM DNA (5'-D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), 4.0 mM DNA (5'-D(*TP*GP*GP*GP*A)-3'), 10 mM potassium chloride, 5 mM potassium phosphate, 100 % [U-100% 2H] D2O
100% D2O
40 mM
6.8
1 atm
307
Bruker AVANCE III 600
2
2D 1H-15N HSQC
4.0 mM DNA (5'-D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), 4.0 mM DNA (5'-D(*TP*GP*GP*GP*A)-3'), 10 mM potassium chloride, 5 mM potassium phosphate, 100 % [U-100% 2H] D2O
100% D2O
40 mM
6.8
1 atm
307
Bruker AVANCE III 600
3
2D 1H-13C HSQC
4.0 mM DNA (5'-D(*CP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3'), 4.0 mM DNA (5'-D(*TP*GP*GP*GP*A)-3'), 10 mM potassium chloride, 5 mM potassium phosphate, 100 % [U-100% 2H] D2O
100% D2O
40 mM
6.8
1 atm
307
Bruker AVANCE III 600
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE III
600
NMR Refinement
Method
Details
Software
simulated annealing
X-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteria
back calculated data agree with experimental NOESY spectrum