7UZ2

Structure of beta-glycosidase from Sulfolobus solfataricus in complex with C5a-fluoro-valienide.

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	10 - 13 % PEG 4000, 0.1 M Sodium Acetate, 0.2M Ammonium Acetate, 5% ethylene glycol.

Crystal Properties
Matthews coefficient	Solvent content
3.44	64.22

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 168.265	α = 90
b = 168.265	β = 90
c = 95.504	γ = 120

Symmetry
Space Group	P 31 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2021-11-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 23-ID-B	1.033	APS	23-ID-B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.83	47.8	99.9	0.027	1	11.6	10.2		136568

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.83	1.88	99.9		1.115	0.28	0.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1uwr	1.83	45.419	136532	6942	99.912	0.209	0.2074	0.2423	41.337

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.871	-0.436		-0.871		2.826

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.159
r_dihedral_angle_4_deg	18.695
r_dihedral_angle_3_deg	16.339
r_dihedral_angle_1_deg	7.288
r_lrange_it	6.453
r_lrange_other	6.437
r_scangle_it	5.416
r_scangle_other	5.415
r_mcangle_it	4.61
r_mcangle_other	4.61
r_scbond_it	4.01
r_scbond_other	4.01
r_mcbond_it	3.685
r_mcbond_other	3.675
r_angle_refined_deg	1.668
r_angle_other_deg	1.392
r_nbd_refined	0.208
r_symmetry_nbd_other	0.187
r_nbtor_refined	0.18
r_nbd_other	0.152
r_xyhbond_nbd_refined	0.147
r_symmetry_xyhbond_nbd_refined	0.128
r_symmetry_nbd_refined	0.122
r_symmetry_xyhbond_nbd_other	0.088
r_symmetry_nbtor_other	0.083
r_chiral_restr	0.08
r_bond_refined_d	0.01
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7926
Nucleic Acid Atoms
Solvent Atoms	340
Heterogen Atoms	24

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing