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Detergent-bound CYP51 from Acanthamoeba castellanii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6MCW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 293 PEG 3350, potassium phosphate, (2R,3R,4S,5S,6R)-2-(((2R,3S,4R,5R,6R)-6-(dodecyloxy)-4,5-dihydroxy-2-(hydroxymethyl)tetrahydro-2H-pyran-3-yl)oxy)-6-(hydroxymethyl)tetrahydro-2H-pyran-3,4,5-triol
Crystal Properties Matthews coefficient Solvent content 2.9 57.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.397 α = 90 b = 101.561 β = 90 c = 122.004 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 BE LENS 2022-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 89.48 0.069 0.022 0.99 34.1 9.5 91205 20.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 28 0.533 0.632 1.2 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6mcw 1.95 28.08 77442 4062 89.44 0.1949 0.1933 0.2015 0.2251 0.2292 RANDOM 25.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.771 r_dihedral_angle_3_deg 13.953 r_dihedral_angle_4_deg 13.485 r_dihedral_angle_1_deg 7.428 r_angle_other_deg 1.287 r_angle_refined_deg 1.22 r_chiral_restr 0.063 r_gen_planes_refined 0.013 r_gen_planes_other 0.008 r_bond_refined_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.771 r_dihedral_angle_3_deg 13.953 r_dihedral_angle_4_deg 13.485 r_dihedral_angle_1_deg 7.428 r_angle_other_deg 1.287 r_angle_refined_deg 1.22 r_chiral_restr 0.063 r_gen_planes_refined 0.013 r_gen_planes_other 0.008 r_bond_refined_d 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7122 Nucleic Acid Atoms Solvent Atoms 784 Heterogen Atoms 156
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction Aimless data scaling PHASER phasing