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DENV1 SLA top stemloop RNA (DenvTSL)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 1 mM RNA (28-MER), 10 mM potassium phosphate 95% H2O/5% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 2 2D 1H-1H TOCSY 1 mM RNA (28-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 3 2D 1H-1H NOESY 1 mM RNA (28-MER), 10 mM potassium phosphate 95% H2O/5% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 4 2D 1H-1H NOESY 1 mM RNA (28-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 5 2D 1H-1H NOESY 1 mM [U-2H] RNA (28-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 6 2D 1H-13C HSQC 1 mM [U-100% 13C; U-100% 15N] RNA (28-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600 7 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] RNA (28-MER), 10 mM potassium phosphate 100% D2O 50 mM 6.5 1 atm 298 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 400 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing TopSpin Bruker Biospin 3 peak picking NMRFAM-SPARKY NMRFAM-SPARKY 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 6 chemical shift assignment NMRFAM-SPARKY NMRFAM-SPARKY