Solution structure of NPSL2
SOLUTION NMR - SOLUTION SCATTERING
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 500 uM 1H NPSL2 RNA (43-MER) | 100% D2O | 50 mM | 7.5 | 1 atm | 288.15 | Bruker AVANCE NEO 600 |
| 2 | 2D 1H-1H NOESY | 500 uM 1H NPSL2 RNA (43-MER) | 90% H2O/10% D2O | 50 mM | 7.5 | 1 atm | 288.15 | Bruker AVANCE NEO 600 |
| 3 | 2D 1H-13C HSQC | 500 uM 1H NPSL2 RNA (43-MER), 12.5 mg/mL unlabeled Pf1 phage | 90% H2O/10% D2O | 50 mM | 7.5 | 1 atm | 288.15 | Bruker AVANCE NEO 800 |
| 4 | 2D 1H-13C HSQC | 500 uM 1H NPSL2 RNA (43-MER), 12.5 mg/mL unlabeled Pf1 phage | 90% H2O/10% D2O | 50 mM | 7.5 | 1 atm | 288.15 | Bruker AVANCE NEO 800 |
| 5 | 2D 1H-1H NOESY | 500 uM 1H NPSL2 RNA (43-MER) | 90% H2O/10% D2O | 50 mM | 7.5 | 1 atm | 288.15 | Bruker AVANCE NEO 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE NEO | 600 |
| 2 | Bruker | AVANCE NEO | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 40 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | Bruker Biospin | |
| 2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
| 3 | chemical shift assignment | NMRViewJ | Johnson | |
| 5 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
