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Horse liver alcohol dehydrogenase with NAD and trifluoroethanol at 85K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7UA6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7 278 50 MM AMMONIUM N-[TRIS(HYDROXYMETHYL)
METHYL]-2-AMINOETHANE SULFONATE, PH 6.7 (AT 25 C), 0.25 MM EDTA,
10 MG/ML PROTEIN, 1 MM NAD+, 100 MM 2,2,2-TRIFLUOROETHANOL, 12
TO 25 % 2-METHYL-2,4-PENTANEDIOL
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.19 α = 91.9 b = 51.14 β = 103.03 c = 92.49 γ = 109.83
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 85 CCD ADSC QUANTUM 315r ROSENBAUM ROCK VERTICAL FOCUSINGMIRROR WITH PT, GLASS, PD LANES 2009-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9184 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 19.94 94.1 0.059 0.068 0.034 9 4.03 282364 9.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 89.5 0.422 0.487 0.242 2.5 4.04
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7ua6 1.1 19.94 279168 2768 94.18 0.1241 0.1239 0.1418 0.1632 RANDOM 14.067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 -0.29 0.24 0.3 0.2 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.981 r_dihedral_angle_4_deg 13.407 r_dihedral_angle_3_deg 10.995 r_dihedral_angle_1_deg 6.659 r_rigid_bond_restr 2.528 r_angle_refined_deg 1.885 r_angle_other_deg 1.543 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.981 r_dihedral_angle_4_deg 13.407 r_dihedral_angle_3_deg 10.995 r_dihedral_angle_1_deg 6.659 r_rigid_bond_restr 2.528 r_angle_refined_deg 1.885 r_angle_other_deg 1.543 r_chiral_restr 0.109 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5570 Nucleic Acid Atoms Solvent Atoms 904 Heterogen Atoms 144
Software Software Software Name Purpose d*TREK data scaling REFMAC phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction