7U8A

Product of 14mer primer with activated G monomer diastereomer 2


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7293.1550 mM PIPES pH 7.0, 65 mM Magnesium chloride, 1 mM Cobalt (III) Hexamine chloride, 26% v/v (+/-)-2-Methyl-2,4-pentanediol
Crystal Properties
Matthews coefficientSolvent content
2.2946.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 42.873α = 90
b = 42.873β = 90
c = 82.763γ = 120
Symmetry
Space GroupP 3 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray98CCDADSC QUANTUM 315r2021-05-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.21.000ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15099.90.0790.0830.0260.99325.910.25553
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.141000.5270.5560.1750.9354.29.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6C8O2.141.416554529199.6590.2030.19910.281823.632
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.004-0.002-0.0040.011
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it5.8
r_lrange_other5.773
r_angle_other_deg3.49
r_scangle_it3.041
r_scangle_other3.039
r_angle_refined_deg2.706
r_scbond_it2.14
r_scbond_other2.139
r_chiral_restr_other1.604
r_symmetry_nbtor_other0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it5.8
r_lrange_other5.773
r_angle_other_deg3.49
r_scangle_it3.041
r_scangle_other3.039
r_angle_refined_deg2.706
r_scbond_it2.14
r_scbond_other2.139
r_chiral_restr_other1.604
r_symmetry_nbtor_other0.26
r_symmetry_nbd_other0.246
r_nbtor_refined0.242
r_nbd_other0.21
r_xyhbond_nbd_refined0.205
r_chiral_restr0.194
r_symmetry_nbd_refined0.191
r_nbd_refined0.142
r_symmetry_xyhbond_nbd_refined0.136
r_metal_ion_refined0.068
r_bond_refined_d0.038
r_bond_other_d0.025
r_gen_planes_refined0.012
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms424
Solvent Atoms54
Heterogen Atoms283

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing