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Cryo-EM structure of W6 possum enterovirus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OSN
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.182 r_dihedral_angle_4_deg 19.637 r_lrange_it 16.13 r_lrange_other 16.097 r_dihedral_angle_3_deg 14.533 r_scangle_it 10.295 r_scangle_other 10.294 r_dihedral_angle_1_deg 7.819 r_mcangle_other 6.092 r_mcangle_it 6.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.182 r_dihedral_angle_4_deg 19.637 r_lrange_it 16.13 r_lrange_other 16.097 r_dihedral_angle_3_deg 14.533 r_scangle_it 10.295 r_scangle_other 10.294 r_dihedral_angle_1_deg 7.819 r_mcangle_other 6.092 r_mcangle_it 6.09 r_scbond_it 6.01 r_scbond_other 6.009 r_mcbond_it 3.568 r_mcbond_other 3.562 r_angle_refined_deg 1.98 r_angle_other_deg 1.349 r_nbd_refined 0.165 r_symmetry_nbd_other 0.164 r_nbtor_refined 0.163 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.082 r_metal_ion_refined 0.048 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 9687 Reported Resolution (Å) 2.96 Resolution Method FSC 0.143 CUT-OFF Other Details relion 3.1 Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (5OSN) Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 1.37
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 750 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM 3.9 CTF CORRECTION CTFFIND 4.08 MODEL FITTING UCSF Chimera RECONSTRUCTION RELION 3.1 MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION