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Structure of SPAC806.04c protein from fission yeast bound to Co2+
X-RAY DIFFRACTION
Starting Model(s)
Initial Refinement Model(s)
Type
Source
Accession Code
Details
experimental model
Other
a low resolution structure (2.75A) obtained with a Phyre2 model for a diffferent crystal of the same protein
Crystallization
Crystalization Experiments
ID
Method
pH
Temperature
Details
1
VAPOR DIFFUSION, SITTING DROP
295
0.3 mM SPAC806.04c, 5 mM CoCl2, 19 mM Tris-HCl (pH 7.5), and 142 mM NaCl buffer mixed with precipitant solution containing 1.8 M sodium phosphate monobasic monohydrate/potassium phosphate dibasic (pH 8.2)
Crystal Properties
Matthews coefficient
Solvent content
2.63
53.2
Crystal Data
Unit Cell
Length ( Å )
Angle ( ˚ )
a = 58.654
α = 90
b = 116.314
β = 90
c = 151.862
γ = 90
Symmetry
Space Group
P 2 21 21
Diffraction
Diffraction Experiment
ID #
Crystal ID
Scattering Type
Data Collection Temperature
Detector
Detector Type
Details
Collection Date
Monochromator
Protocol
1
1
x-ray
100
PIXEL
DECTRIS EIGER2 X 16M
2021-07-07
M
SINGLE WAVELENGTH
Radiation Source
ID #
Source
Type
Wavelength List
Synchrotron Site
Beamline
1
SYNCHROTRON
APS BEAMLINE 24-ID-C
0.97918
APS
24-ID-C
Data Collection
Overall
ID #
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
Rpim I (All)
CC (Half)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1
1.9
49.51
99.9
0.043
0.999
12
9.4
82654
22.7
Highest Resolution Shell
ID #
Resolution (High)
Resolution (Low)
Percent Possible (All)
Percent Possible (Observed)
Rpim I (All)
CC (Half)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1
1.9
1.94
99.8
0.383
0.75
2.2
9.6
Refinement
Statistics
Diffraction ID
Structure Solution Method
Cross Validation method
Starting model
Resolution (High)
Resolution (Low)
Cut-off Sigma (F)
Number Reflections (Observed)
Number Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (Observed)
R-Work (Depositor)
R-Work (DCC)
R-Free (Depositor)
R-Free (DCC)
Mean Isotropic B
X-RAY DIFFRACTION
MOLECULAR REPLACEMENT
FREE R-VALUE
a low resolution structure (2.75A) obtained with a Phyre2 model for a diffferent crystal of the same protein